rs33472573 SNP Detail

Summary

• ID
  rs33472573
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3647606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGGTAGA GATGCATGGA
  TCCCAGGGGG CTCATGGATC AGCTAGTTCA GCTGGAATGG CAAAGCCAAT GTTTAGGGAG
  AGATTCTGTC TCAAAACCTC AGTGGATGTG CTCAGCTGTC GAGAGCTCTG CCTACTCTCC
  TAGAGAACAC AGCCATATTT CCCAGAACCC ATGTCTGGTG GCTCACAACT ATCTGTAACT
  K
  TAGCTTCTGG AGGTCTGACT GGTACCCACC CTCTTCTGGC CTCTGAGGGC ACTCGTATGG
  CACATGTGTG TGCACATGCG CGTACACACA CACACACAGC CCTGGCTTGT ACCTATATGC
  CTGACTCTGT AGTTCCTAGT CCAGACCATT CCTTCTTTTC GATCATGTAC TTTGTAGAAG
  AGTGAGCAGA TGGGTTATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46280336	mCV22853515	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss148546646	ENSMUSSNP4143912	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33472573					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3647606 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	1406 bp distal
Rr189485	regulatory region 189485	795 bp proximal
Rr381636	regulatory region 381636	within coordinates
Tssr76064	transcription start site region 76064	1082 bp downstream
Tssr76065	transcription start site region 76065	709 bp upstream
Tssr76066	transcription start site region 76066	733 bp upstream
Tssr76067	transcription start site region 76067	748 bp upstream
Tssr76068	transcription start site region 76068	765 bp upstream
Tssr76069	transcription start site region 76069	837 bp upstream
Tssr76070	transcription start site region 76070	987 bp upstream
Tssr76071	transcription start site region 76071	1036 bp upstream
Tssr76072	transcription start site region 76072	1915 bp upstream