rs33472942 SNP Detail

Summary

• ID
  rs33472942
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119356972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTA GGAACCAAAC TTAGAGGTCC
  W
  TTGCAAGAGA AGCATATGTA TGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45283100	mCV23191623	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147334701	ENSMUSSNP2137823	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T		A
ss320475894	CHEV_2_119352227	CHEVERUD	SCREENING_POP	f	SNP					A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33472942					SNP	T	T	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119356972 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr64	DNA Segment, Chr 2, Derry C. Roopenian 64	1457 bp distal
D2Mit395	DNA segment, Chr 2, Massachusetts Institute of Technology 395	1454 bp distal
Exd1	exonuclease 3'-5' domain containing 1	Intron
Rr563524	regulatory region 563524	727 bp distal