rs33473031 SNP Detail

Summary

• ID
  rs33473031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17848049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGCGTG CAGGAGAGTG
  TAAGCAAGGG CAAGGAGGGT GCCCTTTGCT TTGCCCAGGC GCAGCTCTTG GGGGCTGCGC
  GCCTTCTGCA GCTCTTTGGT TTCAAGGACA CAGCGAGCTG TTCAGGACTT TGGGAGCCAA
  CATCTGTCTG ACTGGTGACG TCAGCAGCCC GTGTAATCCT CTTGTGCTGA AGGCAGATGC
  Y
  TTATTTGTTT GGCTGGAGCG AGCCATTAAT CCCTAATTCT GGATCAGCAA GCGAGGGGGA
  AAGACCGGAC CGCTACGATC CACCCCCTCC CTGCCCCCAC CGCCCATCCT AAAGCACCTT
  ATATCGCGGA AACCACTCAG CCTCCTCTTT CCTCCGAGAA CACGCGGAGC AGCCCCTGAA
  AACGCTTTGG TCCTCTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817763	NES10864825	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33473031					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817763	NES10864825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17848049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	within coordinates
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	1777 bp upstream
Mir124b	microRNA 124b	1800 bp downstream
Rr573849	regulatory region 573849	1591 bp distal
Rr573850	regulatory region 573850	776 bp distal
Rr573851	regulatory region 573851	within coordinates
Tssr28485	transcription start site region 28485	23 bp upstream
Tssr28486	transcription start site region 28486	104 bp upstream
Tssr28487	transcription start site region 28487	130 bp upstream
Tssr28488	transcription start site region 28488	411 bp upstream
Tssr28489	transcription start site region 28489	1858 bp upstream