rs33473298 SNP Detail

Summary

• ID
  rs33473298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAGTCA AAGTCCTCTG
  CCCCGATAAA AAACACCGAC CTTTAGACCT GCTTTCTGTC TGGACTCCAG GCACAGAAAT
  GATATTTTGT CAAGTAATTC CAGCCCCCAC TCAGCACTTT ACAAACATGT TTTACAAACA
  CACAAGAACG TATCTTTTCT TTAGAATGTT TTATTTCATA TTTTGTTTTA CGTTTCCAAG
  Y
  ATCTTCGTAG GAACGCTTGT TGGATATTTC AAGCAGACAG AGGTACAGCT CAGTTATAGC
  CCAGTTCACT TAGCTCTGTG CTCAGGGTGA AACATGGCCT AATTCAAACG CCCAGGGTGA
  CTTAGAGTAT CAGAGTGAAC ATTTACAGTC AGGAAGTGGT GACATGTTTT GTTCCCATTG
  GGTAGTACTG AAGTTGCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817700	NES10865034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33473298					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817700	NES10865034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1221 bp distal
Gm10742	predicted gene 10742	1454 bp upstream
Gm56811	predicted gene, 56811	1214 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1569 bp upstream
Rr573842	regulatory region 573842	1225 bp distal
Rr573843	regulatory region 573843	724 bp distal
Rr573844	regulatory region 573844	480 bp proximal
Rr573845	regulatory region 573845	981 bp proximal
Rr573846	regulatory region 573846	1105 bp proximal
Rr573847	regulatory region 573847	1711 bp proximal
Rr573848	regulatory region 573848	1881 bp proximal
Tssr28480	transcription start site region 28480	1375 bp upstream
Tssr28481	transcription start site region 28481	1540 bp upstream
Tssr28482	transcription start site region 28482	1604 bp upstream
Tssr28483	transcription start site region 28483	1699 bp upstream
Tssr28484	transcription start site region 28484	1768 bp upstream
Tssr32677	transcription start site region 32677	1507 bp upstream
Tssr32678	transcription start site region 32678	1255 bp downstream