rs33474140 SNP Detail

Summary

• ID
  rs33474140
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17843120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGTGGCA GGTGAGTGAG
  AGAGGAAGGT GGCCTTGCCA CCCCACCACC TTCATTGAGG TAGAGCAATG GCTTGGTCTG
  GATTCTTTCT GAAAGAGAAA CTGCAGGAAT GCAGAGTTGC TTTTTGCGCC CCAACCTACT
  TAAAGGAGTG GGAGCCAAAC CCCTGCTCCC AACAACAAGC AGCATTTTCC TTATCAGAAG
  S
  CCTCTGGGAC TCAGCAAGCT TGATAGGCTC TGGCTCTGAT GTCCCATAAG GCCCACTCTG
  TGGCTGGAAG AAACATGATC AAAACCCATG GAACTCAGAC TTCACTGACC ACAGAGTCCT
  GCCTGGAAAA GTTGAAAACA TTCTCCCGAG CAAGGCCTAT TTGTAGAACT CCTCAACCTA
  GTGTCTGTAT AGCAAATTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817712	NES10865041	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33474140					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817712	NES10865041	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17843120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1825 bp distal
Cpgi12995	CpG island 12995	1458 bp proximal
Gm56811	predicted gene, 56811	1818 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	965 bp upstream
Rr573842	regulatory region 573842	1829 bp distal
Rr573843	regulatory region 573843	1328 bp distal
Rr573844	regulatory region 573844	within coordinates
Rr573845	regulatory region 573845	377 bp proximal
Rr573846	regulatory region 573846	501 bp proximal
Rr573847	regulatory region 573847	1107 bp proximal
Rr573848	regulatory region 573848	1277 bp proximal
Tssr28480	transcription start site region 28480	771 bp upstream
Tssr28481	transcription start site region 28481	936 bp upstream
Tssr28482	transcription start site region 28482	1000 bp upstream
Tssr28483	transcription start site region 28483	1095 bp upstream
Tssr28484	transcription start site region 28484	1164 bp upstream
Tssr32678	transcription start site region 32678	651 bp downstream