rs33474143 SNP Detail

Summary

• ID
  rs33474143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17843210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGAAA CTGCAGGAAT
  GCAGAGTTGC TTTTTGCGCC CCAACCTACT TAAAGGAGTG GGAGCCAAAC CCCTGCTCCC
  AACAACAAGC AGCATTTTCC TTATCAGAAG CCCTCTGGGA CTCAGCAAGC TTGATAGGCT
  CTGGCTCTGA TGTCCCATAA GGCCCACTCT GTGGCTGGAA GAAACATGAT CAAAACCCAT
  K
  GAACTCAGAC TTCACTGACC ACAGAGTCCT GCCTGGAAAA GTTGAAAACA TTCTCCCGAG
  CAAGGCCTAT TTGTAGAACT CCTCAACCTA GTGTCTGTAT AGCAAATTCT GATCCTATTT
  CATATTAAGA ACATACTTAC GTTTTTATTT AGTCCAGCAG ATTTTCCCAA ATGACTTAAT
  TTCTTCCTGA GGCAATTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46817715	NES10865042	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33474143					SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817715	NES10865042	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17843210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1915 bp distal
Cpgi12995	CpG island 12995	1368 bp proximal
Gm56811	predicted gene, 56811	1908 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	875 bp upstream
Rr573842	regulatory region 573842	1919 bp distal
Rr573843	regulatory region 573843	1418 bp distal
Rr573844	regulatory region 573844	within coordinates
Rr573845	regulatory region 573845	287 bp proximal
Rr573846	regulatory region 573846	411 bp proximal
Rr573847	regulatory region 573847	1017 bp proximal
Rr573848	regulatory region 573848	1187 bp proximal
Tssr28480	transcription start site region 28480	681 bp upstream
Tssr28481	transcription start site region 28481	846 bp upstream
Tssr28482	transcription start site region 28482	910 bp upstream
Tssr28483	transcription start site region 28483	1005 bp upstream
Tssr28484	transcription start site region 28484	1074 bp upstream
Tssr32678	transcription start site region 32678	561 bp downstream