rs33474205 SNP Detail

Summary

• ID
  rs33474205
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85391710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC AGGCGGAAGT CCACACGCTT
  W
  GGCCCTCTAG CGCCGCTCTT TCTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46280156	mCV24192570	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss145391633	ENSMUSSNP3382724	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322751242	CHEV_8_87188980	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33474205					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85391710 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	55 bp upstream
Cpgi20702	CpG island 20702	1908 bp distal
Cpgi20703	CpG island 20703	570 bp distal
Cpgi20704	CpG island 20704	within coordinates
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	160 bp upstream
Rr368565	regulatory region 368565	881 bp downstream
Rr368566	regulatory region 368566	within coordinates
Rr666565	regulatory region 666565	1737 bp distal
Rr666566	regulatory region 666566	843 bp distal
Rr666567	regulatory region 666567	within coordinates
Rr666568	regulatory region 666568	64 bp proximal
Tssr2627	transcription start site region 2627	17 bp upstream
Tssr78425	transcription start site region 78425	843 bp downstream
Tssr78426	transcription start site region 78426	824 bp downstream
Tssr78427	transcription start site region 78427	516 bp downstream
Tssr82110	transcription start site region 82110	1126 bp upstream