rs33474295 SNP Detail

Summary

• ID
  rs33474295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122835694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAC AAAACAGACG GCAGCCACCT
  Y
  GTAGGCAGCA CAGAGGAAAA AGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss45783224	mCV22632327	ABI	CRAMUS_MOUSE	f	SNP		C					T	T
ss51196184	NES13816071	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T			T		C	C
ss149189829	ENSMUSSNP1322306	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss321669489	CHEV_5_123147640	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33474295					SNP	C	C	T	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196184	NES13816071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122835694 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	31 bp upstream
Gm71244	predicted gene, 71244	within coordinates
Rr378567	regulatory region 378567	502 bp upstream
Rr619947	regulatory region 619947	1780 bp distal
Rr619948	regulatory region 619948	471 bp proximal