rs33474459 SNP Detail

Summary

• ID
  rs33474459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69541974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTG GACCGTGCAG AAGGTGTAAT
  R
  TCATCGCTGA TGTGGGCAGG CCCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46280353	mCV22776453	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss50565133	NES14071386	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G	G	A	A		G	G	G	G		G
ss145091545	ENSMUSSNP1480870	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss322693717	CHEV_8_71613221	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33474459					SNP	A	A	G	G	A	G	G	G	G	A	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565133	NES14071386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69541974 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	within coordinates
Rr400869	regulatory region 400869	535 bp downstream
Rr664484	regulatory region 664484	666 bp distal
Rr664485	regulatory region 664485	within coordinates
Rr664486	regulatory region 664486	1529 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	87 bp upstream
Tssr77656	transcription start site region 77656	595 bp downstream
Tssr77657	transcription start site region 77657	578 bp downstream
Tssr77658	transcription start site region 77658	526 bp downstream
Tssr81518	transcription start site region 81518	107 bp upstream