rs33474749 SNP Detail

Summary

• ID
  rs33474749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:82071020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT TTGGACAAGT GGGTACTGTC
  R
  GCTTACTCGG TGTGGGAGGA AATAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46281090	mCV23366618	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss145259413	ENSMUSSNP3491321	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
ss322727479	CHEV_8_83868290	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33474749					SNP	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:82071020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20635	CpG island 20635	1358 bp distal
Gm51582	predicted gene, 51582	1728 bp upstream
Inpp4b	inositol polyphosphate-4-phosphatase, type II	Intron
Rr666048	regulatory region 666048	1819 bp distal
Rr666049	regulatory region 666049	438 bp distal
Tssr78167	transcription start site region 78167	1881 bp downstream
Tssr78168	transcription start site region 78168	1846 bp downstream
Tssr78169	transcription start site region 78169	1816 bp downstream
Tssr78170	transcription start site region 78170	1774 bp downstream
Tssr78171	transcription start site region 78171	1673 bp downstream