rs33474996 SNP Detail

Summary

• ID
  rs33474996
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17843211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG AAACATGATC AAAACCCATG
  S
  AACTCAGACT TCACTGACCA CAGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46817718	NES10865043	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	G	C	G		G	G		G
ss320673715	CHEV_3_17689047	CHEVERUD	SCREENING_POP	f	SNP									G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33474996					SNP	C	G	G	C	C	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46817718	NES10865043	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17843211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	1916 bp distal
Cpgi12995	CpG island 12995	1367 bp proximal
Gm56811	predicted gene, 56811	1909 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	874 bp upstream
Rr573842	regulatory region 573842	1920 bp distal
Rr573843	regulatory region 573843	1419 bp distal
Rr573844	regulatory region 573844	within coordinates
Rr573845	regulatory region 573845	286 bp proximal
Rr573846	regulatory region 573846	410 bp proximal
Rr573847	regulatory region 573847	1016 bp proximal
Rr573848	regulatory region 573848	1186 bp proximal
Tssr28480	transcription start site region 28480	680 bp upstream
Tssr28481	transcription start site region 28481	845 bp upstream
Tssr28482	transcription start site region 28482	909 bp upstream
Tssr28483	transcription start site region 28483	1004 bp upstream
Tssr28484	transcription start site region 28484	1073 bp upstream
Tssr32678	transcription start site region 32678	560 bp downstream