rs33475006 SNP Detail

Summary

• ID
  rs33475006
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29577713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCTGTT GTAGCCCTGG
  CTGTCCTGGA TCTCCCCTGG GTTTTTAAAT ACATACAGAA ATAATGTCAT TTGGCATTTG
  GGGTTTGCTT AATCAGGACA CAGAAGGGAA ATCGAAAGAG CCACACATAG GTGGGGAATG
  AACTCTGGTG TGGACTGAGA GGGCTCATGG GGGTGAATTA TTCTATTCTG TCTACCCTCG
  K
  GTATGTTCTT CATTTTTTTA TGACAAAAAG TGCAAGGGGA TCTAAGGTAT GTTCTTCATT
  TTTTTATGAC AAAAAGTGCA AGGGGATCTA AGGACGATGC TCAGTTGGTA GAGAGCCTGG
  CCGGCTCTGC ATCCTCAGCA TGGCATAAAA CTAGCATTGT GGGGCTGGAG AGATGGCTCA
  GCAGTTAAGA GCACTTGCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39540016	mCV22894614	ABI	CRAMUS_MOUSE	f	SNP		G			T		T
ss60557936	NES16578219	PERLEGEN	MM_PANEL2	f	SNP	T		G	G		T		T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33475006					SNP	T	G	G	G	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557936	NES16578219	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29577713 () rs orientation: forward

Symbol	Name	Function Class
Rr1771	regulatory region 1771	861 bp distal
Rr405148	regulatory region 405148	1991 bp upstream
Rr524884	regulatory region 524884	1205 bp distal
Rr524885	regulatory region 524885	1986 bp proximal