rs33475085 SNP Detail

Summary

• ID
  rs33475085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:57879811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG ATGTGTTCCT GGTTTCTTGT
  Y
  TGTTTGTTTG TTTGTTTTTG AAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45783319	mCV24207280	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148495455	ENSMUSSNP5244948	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321551265	CHEV_5_58113708	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33475085					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:57879811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15875	CpG island 15875	1848 bp distal
Gm42635	predicted gene 42635	1924 bp upstream
Pcdh7	protocadherin 7	within coordinates
Rr125227	regulatory region 125227	within coordinates
Rr125228	regulatory region 125228	1189 bp proximal
Tssr46294	transcription start site region 46294	594 bp downstream
Tssr46295	transcription start site region 46295	460 bp downstream