rs33477233 SNP Detail

Summary

• ID
  rs33477233
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:54076786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CCGTCATTGG TCTCTTGCAT
  R
  TGACATCATA ATGAGACTTT GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39540941	mCV22335500	ABI	CRAMUS_MOUSE	f	SNP		A	A					G
ss62787584	NES17356809	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	G	G		G	G	G	A		G
ss145776148	ENSMUSSNP6488660	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss325420696	CHEV_17_53909083	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33477233					SNP	G	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62787584	NES17356809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:54076786 () rs orientation: forward

Symbol	Name	Function Class
Tssr145231	transcription start site region 145231	63 bp upstream
Tssr145232	transcription start site region 145232	71 bp upstream
Tssr145233	transcription start site region 145233	99 bp upstream