rs33477651 SNP Detail

Summary

• ID
  rs33477651
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:144132168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttatgtagt ccaggctggc ctcaaactta
  ttatggagcc tgaggatacc cttgaattcc tgatcttgcc ttcaccttca gagtacagac
  atggcgtgcC TGGCGTATTT ATCTAGAttt tctttttttt tttttttttt tttttttttt
  K
  gtgacagtct tggtatgtag tcctgggtag tctcaaactc acgatcctcc tgcctcagtt
  tcctgagtgc agggcctatg ggcatccagc cctttgctta actttTGAAG CAAAACTCCA
  TTTGGAAAAC CTGCTGAGGA GTGACCCGAC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45783270	mCV22338201	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss144608210	ENSMUSSNP108821	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
ss321709375	CHEV_5_144956219	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33477651					SNP	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144132168 () rs orientation: forward

Symbol	Name	Function Class
Bhlha15	basic helix-loop-helix family, member a15	909 bp downstream
Rr624360	regulatory region 624360	620 bp distal
Tecpr1	tectonin beta-propeller repeat containing 1	mRNA-UTR