rs33478360 SNP Detail

Summary

• ID
  rs33478360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70357145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG GGGCTCAGTA GACTCAGGGT
  Y
  TGTATTTCTA TATTGTCTTT TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46281042	mCV22895538	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145115974	ENSMUSSNP5615725	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss322697774	CHEV_8_72428394	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33478360					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70357145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	904 bp distal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	1937 bp upstream
Rr400888	regulatory region 400888	1012 bp downstream
Rr664596	regulatory region 664596	1293 bp distal
Rr664597	regulatory region 664597	1786 bp distal
Rr664598	regulatory region 664598	1667 bp distal
Rr664599	regulatory region 664599	within coordinates
Tssk6	testis-specific serine kinase 6	977 bp downstream
Tssr81548	transcription start site region 81548	1273 bp upstream