rs33479366 SNP Detail

Summary

• ID
  rs33479366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3811933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTAGAGC AGAGAACTGG
  CACACACAGC ACTTTATGAA TGTTTGCCAA ATGTGCAGTT CTGATTTACT TTATATTTCT
  TACCTTCGGT AGCGGAGCAT CAGGGCCAGC CAAGTGGGTA GTTTTAACCA GTTCCATTTC
  ACTTCACAGG GTACTAAATT CACAAAATAA CTTCCTTATA TGAATATATT TTAGTGGGTT
  W
  TTAATTACTA AATAAAAATA TCTTTTATTT TATTGCAGAG CAATAAATTG ATCTTTGGTT
  TAGCTTATCA TTCTTTTATA ATAGTGAATT CCAAATCTAG AAGATGTCAC TAAGCCAGCT
  GTATGAACCA CACCATCAGT TTTTGTGGCA TCTGGGGTGT CCCTCTGTGG ATAACCTTTT
  GTTTGTGAGT ACAGTGCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45283805	mCV24522134	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss146263106	ENSMUSSNP7231533	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33479366					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3811933 () rs orientation: forward

Symbol	Name	Function Class
Gm13180	predicted gene 13180	within coordinates
Gm36031	predicted gene, 36031	within coordinates
Rr550967	regulatory region 550967	155 bp distal
Tssr15925	transcription start site region 15925	686 bp downstream