rs33479540 SNP Detail

Summary

• ID
  rs33479540
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24010953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCAGATCTG AGCCTTTCCC TCTTCCACCT TCCTGCCTGC TGGTTTTTGA TTGTTGTTTG
  CTTGCTTGCT TGCTTGCTTG CTTGCTTGTT GTGGTCTTTT GAAGACAGGG TTTCACTCTG
  TGGCCCTGGC TGTCCTGGAA CTCACTCTCT AGATCAGGCT GGCCTCAAAG ATCTGCCTGC
  CTCTGCCTCC CAAGTGCCTG GATTAAAGGC ATGCATCATT ACCACCCCGC TGTTTTTGTT
  GTTGCTTTTT GAGACAGGGT TTTTCTGTGT AACCCTGGCT GTCCTTGAAC TTTTTTTTGA
  H
  TTTTGTAGAC CAGGCTGGCC TGGAACTCAC AGAGATCTGC CTGCCTCTGT ATCTTGATTC
  CTGAGGTTAA GGGCTTGCAC CAAGACAGAT CACCAGGGAT CTATCAGCTG TTTATAATTC
  TGCCCCAGCT ACATGTGGTC TCCGTATGTG AGAAAGCTGG ATGTGTAGAT GGCAGAGGTT
  AACTGCGGTG GAGAACCTCA TTTATGCCGC TGGGAAGGCA GCATCAAGTT TGGGGTGAGA
  TATTTCTGTA GTGAAGCTGT TTTAGGGTCA CCCATGCTCC CACTCATTCC TACCCTATGG
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39541089	mCV25239257	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss39542353	mCV25239255	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33479540					SNP	?	C	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24010953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	1165 bp distal
D930048G16Rik	RIKEN cDNA D930048G16 gene	within coordinates
Gm52285	predicted gene, 52285	within coordinates
Rr339285	regulatory region 339285	152 bp distal
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142954	transcription start site region 142954	1309 bp downstream