rs33480084 SNP Detail

Summary

• ID
  rs33480084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114362483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA GTGTGGTGCG GCAGCGGCTC
  Y
  TCAAAGTGTT GCTGTCCACC CAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46281496	mCV22950653	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss51977172	NES14990231	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	C	C	C	C	C	C	C	T
ss145772012	ENSMUSSNP2782716	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33480084					SNP	C	T	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51977172	NES14990231	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114362483 () rs orientation: forward

Symbol	Name	Function Class
4921521C08Rik	RIKEN cDNA 4921521C08 gene	71 bp upstream
Cpgi21080	CpG island 21080	within coordinates
Mon1b	MON1 homolog B, secretory traffciking associated	within coordinates
Rr368624	regulatory region 368624	within coordinates
Rr401146	regulatory region 401146	258 bp downstream
Rr670300	regulatory region 670300	6 bp distal
Tssr79522	transcription start site region 79522	254 bp downstream
Tssr79523	transcription start site region 79523	221 bp downstream
Tssr79524	transcription start site region 79524	9 bp downstream
Tssr79525	transcription start site region 79525	within coordinates