rs33480222 SNP Detail

Summary

• ID
  rs33480222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11259868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGGGGGACCC TCAGGACCAG GGAGCCCTGG TTCTCCTTTG ATGACATCGT AGGGACCTGG
  AGGCCCAGGG GGACCTTGGA GACCTGTGGG AATGACAGGC AGAGGATCGG CTTCACTGTC
  AGCAGCCACT GTACCATCAC CAAACACACC ATCACAGAGC CTCATCAAAT GCACAGGTGA
  TGTGTGCTAC ATCCTTCTTG TTTAACTAAG CCAAAAATCC TGCCCTCCCA ACTCCATTCT
  GGAAACCAAC AGCTGCCACC TGCCCTTCCT CTCCTGAAGA TGCCCGTGGG CACAGCAAAC
  R
  CCACCCAGAG TCATTGTGAG CAGTGGAAGG CAGATTTTCT TCTGTTCCAA CTCTAAGTGG
  CTGGTGTCGG TCTGATGTCA AAGCCTGTGC AACATGCTGG ATCCCCAACA CGAAGGTTCC
  TCTCGCCCCC CTCTCTTCTC CCCTGGACTT GCCGAGTCAC ACACCAGACA ACTCCACTAT
  CAAGACAGGC TGATGCCAAA ACTTCCAACA AGAGTTCCTA ATCTCTGTTT TCTACTGATG
  TTTCCATTCA TCTGACATCC CTCCAATCCC ACGTGTTTGG TAGCTTCTGC ATCTGCCCAG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46281156	mCV23752770	ABI	CRAMUS_MOUSE	f	SNP		A	G					G
ss51941319	NES14960085	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	A	G	A	A	G
ss148666858	ENSMUSSNP5790016	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33480222					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51941319	NES14960085	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11259868 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	1705 bp downstream