rs33480368 SNP Detail

Summary

• ID
  rs33480368
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3427268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGATGTA CCTTTGTTTT
  TTTTGTTTGT TTGTTTGGTT TGGTTTGGTT TGGTTTGGTT TGGTTTTTTG AGACAGGGTT
  TCTCTGTATA GCCCTGGCTG TCCTGGAGCT CACTTTGTAG ACCAGGCTGG CCTCGAACTC
  AGAAATCCAC CTGCCTCTGC CTCCCGAGTG CTGAGATTAA AGGCGTGCAC CACCACACCC
  R
  GCTGTACCTT TGTTTTTGTA AGAGTATGTT TATGTGTGTA AATGGTGGTT CTGCTAGCAA
  GAATGCTAGG CCGGAGAGGT GGCTCAGTGG TGAGCGATGG CTGCTGCGAT GGGCCAGACA
  TGATAGAGGT TGAGAATGTA GTAGTTCACT GTCGGACAGA GTTTTGAGTC AAGGGTCAGT
  CAAAGAGGGT CACTCCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45283889	mCV23104875	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss146261828	ENSMUSSNP2662476	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320204515	CHEV_2_3343503	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs33480368					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3427268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1817 bp distal
Dclre1c	DNA cross-link repair 1C	within coordinates
Rr550903	regulatory region 550903	1763 bp distal