rs33483342 SNP Detail

Summary

• ID
  rs33483342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138085698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC CTTAAGTTCA TTTTTAAAAA
  R
  TAAGCCTTCC CCAGTGTCTA CCAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45783884	mCV22888304	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss144537739	ENSMUSSNP4143610	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321703429	CHEV_5_138528664	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J	LG/J	SM/J
rs33483342					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138085698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	1762 bp distal
Gm57302	predicted gene, 57302	1851 bp upstream
Rr124606	regulatory region 124606	297 bp distal
Tssr49410	transcription start site region 49410	1847 bp upstream
Zkscan1	zinc finger with KRAB and SCAN domains 1	within coordinates