rs33484083 SNP Detail

Summary

• ID
  rs33484083
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57413511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TTTTCTCTTT TCCTTCCTCT
  M
  TCCCTCCCAT GTAGCCCAGG CTTCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
ss39541315	mCV23460363	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss145810080	ENSMUSSNP6235413	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325427561	CHEV_17_57245934	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	DBA/2J	LG/J	SM/J
rs33484083					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57413511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	397 bp distal
D17Mit252	DNA segment, Chr 17, Massachusetts Institute of Technology 252	1289 bp proximal
Gm11110	predicted gene 11110	569 bp upstream
Rr529280	regulatory region 529280	1176 bp distal
Rr529281	regulatory region 529281	99 bp distal
Rr529282	regulatory region 529282	1434 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	within coordinates
Tssr145375	transcription start site region 145375	1090 bp downstream
Tssr145376	transcription start site region 145376	121 bp upstream
Tssr148901	transcription start site region 148901	563 bp upstream