rs33484788 SNP Detail

Summary

• ID
  rs33484788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35972122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT CTGTGAAGCC CAAGTGGGAG
  Y
  TTCCTGTGCT CCCCCACAGC AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45784813	mCV22746012	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss148228527	ENSMUSSNP3498137	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33484788					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35972122 () rs orientation: forward

Symbol	Name	Function Class
Ablim2	actin-binding LIM protein 2	within coordinates
Rr610026	regulatory region 610026	328 bp distal
Rr610027	regulatory region 610027	within coordinates
Tssr45961	transcription start site region 45961	407 bp downstream
Tssr45962	transcription start site region 45962	378 bp downstream
Tssr45963	transcription start site region 45963	325 bp downstream
Tssr45964	transcription start site region 45964	296 bp downstream