rs33486477 SNP Detail

Summary

• ID
  rs33486477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:41864742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA ACTTCGGGTC GAGAACTTGG
  R
  CCTAGGAGGC AGGGGACTAA CTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45784741	mCV22767911	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33486477					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:41864742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15822	CpG island 15822	within coordinates
Gm72243	predicted gene, 72243	837 bp upstream
Gm72274	predicted gene, 72274	within coordinates
Rab28	RAB28, member RAS oncogene family	within coordinates
Rr399068	regulatory region 399068	692 bp upstream
Tssr46070	transcription start site region 46070	221 bp downstream
Tssr50838	transcription start site region 50838	483 bp upstream
Tssr50839	transcription start site region 50839	18 bp downstream
Tssr50840	transcription start site region 50840	271 bp downstream
Tssr50841	transcription start site region 50841	570 bp downstream
Tssr50842	transcription start site region 50842	719 bp downstream
Tssr50843	transcription start site region 50843	736 bp downstream