rs33486482 SNP Detail

Summary

• ID
  rs33486482
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24600648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTGAGTT TGTAATCCCT GGGACCCACG TGTGGAAGGA
  GAGAACCAGT TCTTGTAAAC TGTCCTTTGA TCTCAACTCA CTGTGGAGTG CTCAGGCATG
  S
  GTGTGTTTCT CGCACCCCCC CCCACACACA CACACAAATA AATAAATAAA ATTACTATAT
  TTTAAAAATA AAGAGTAGAA GGAGAGCTGG AGACATGGC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45784748	mCV25442803	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148093026	ENSMUSSNP2468626	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
ss321495663	CHEV_5_23901468	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33486482					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24600648 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	894 bp distal
Rr112284	regulatory region 112284	553 bp proximal
Rr112285	regulatory region 112285	1753 bp proximal
Rr124925	regulatory region 124925	247 bp distal
Rr398998	regulatory region 398998	1941 bp downstream
Rr398999	regulatory region 398999	1180 bp downstream
Tssr45411	transcription start site region 45411	1986 bp downstream
Tssr45412	transcription start site region 45412	1220 bp downstream