rs33486670 SNP Detail

Summary

• ID
  rs33486670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89587658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTAGTGT CCTGGTTTTT ACCATAGACA TACTACTGAG
  AGGGATAATG TGGTATTCAG TGTTACCAGA TGGATGGAAT ATACCTGCCA TGTGGCCTGT
  K
  CTTTATAATA AAGTTATAAT ATCACAGATT AAATCATCCC CAGTGAAGAT TTTCAAATAT
  TCAGCATTGA GACATAGTGT CTTTTCTGGC CAAATTTTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45785191	mCV22861596	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	T
ss148801892	ENSMUSSNP3338710	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		T
ss321604692	CHEV_5_89868824	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33486670					SNP	T	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89587658 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr47069	transcription start site region 47069	1392 bp upstream
Tssr51708	transcription start site region 51708	1525 bp upstream
Tssr51709	transcription start site region 51709	1344 bp upstream
Tssr51710	transcription start site region 51710	153 bp upstream
Tssr51711	transcription start site region 51711	1464 bp downstream
Tssr51712	transcription start site region 51712	1796 bp downstream
Tssr51713	transcription start site region 51713	1815 bp downstream
Tssr51714	transcription start site region 51714	1836 bp downstream
Tssr51715	transcription start site region 51715	1853 bp downstream
Tssr51716	transcription start site region 51716	1872 bp downstream