rs33487095 SNP Detail

Summary

• ID
  rs33487095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44146865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAAGGG ATTAGCAAAC
  ATGGTGTACC CTTGAGGGGA TAATGAGTTA GTAGTAATTC ATTTCTCAAA AAAAAAAAAG
  ACAAACTGAT AAACAACCAA AATTTCTACT TACAGACTGT CAAGGTATAG AAAGTCCCAC
  CAAGCTAATA AGCTACCAAT ATTTTAACTA GCATTCAGAA TTCCTTCCTA TTTCAGACAG
  Y
  GATCTATCAA ATGAGCTGGT TCTGCCACAC CAGGGGAGGC AGAAAGTGAG TCTTGTTACC
  TTTCTCCTAT GGCACGTGCA AGGGAAGAGG TCATCCTCGG ATTGTGGCTC TACCCTCTTC
  ATACCCTCTC GAATTTGGGG CTCGCTCACT TGTAAATTTG CATAGCCCTG TTAAATAGCA
  ATACAAAAGC ATTTCTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47304725	NES11074732	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33487095					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47304725	NES11074732	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44146865 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29247	predicted gene 29247			within coordinates
Poglut2	protein O-glucosyltransferase 2			Intron
				Noncoding-Transcript-Variant