rs33487474 SNP Detail

Summary

• ID
  rs33487474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31404503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAGAGCC TGCATGAACA CGTCTCCAAA GGCGAACCCT
  GAGCTTCTCT CATGGGTTGA CTATAACCTC CTTCTTATTT GCCTGCCTGC AACCAAGACA
  Y
  GTGATCTTGC TTGGAGCAGA AGCTGCTAAA GTATGGATCA CGTACCATGT GGAGGCTGAG
  TTACCTTGCA TTTAGGGCAG GCTCTAGATC TGACAACTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss39542045	mCV24387645	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145457860	ENSMUSSNP1911912	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs33487474					SNP	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss144591512	ENSMUSSNP6311464	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31404503 () rs orientation: forward

Symbol	Name	Function Class
Rr525395	regulatory region 525395	1810 bp proximal
Tmprss3	transmembrane protease, serine 3	within coordinates
Tssr5079	transcription start site region 5079	692 bp downstream
Tssr5080	transcription start site region 5080	1091 bp downstream