rs33487477 SNP Detail

Summary

• ID
  rs33487477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31342635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCTTTGA CCATGGCTAC TAACAAACCA CAACCAAGCC
  CCTTAACTGA CCAACCACCA CCCACTCTCT TCTTCCCCTC TCTCAAAGCC CTAGAATTTC
  Y
  ATACCCTCTG AAAATTTCCC AAAATTTCAA ACATCACACA ATCACAGGAA TTATCTGCAG
  CTGGCAAAAC TGTGCCTCTG CTAGAGCATG AGGCAAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39542048	mCV22897711	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss145456779	ENSMUSSNP6036712	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss325358772	CHEV_17_31260606	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33487477					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31342635 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1035 bp distal
Rr334775	regulatory region 334775	1566 bp proximal
Rr341219	regulatory region 341219	1235 bp distal
Tff3	trefoil factor 3, intestinal	1645 bp downstream