rs33488201 SNP Detail

Summary

• ID
  rs33488201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70353976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAA GCCTCCAAAC TCCAGGTTAG
  Y
  GCTTCTCGCA GGCTTAGTTT CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46282327	mCV22895320	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss145115922	ENSMUSSNP957892	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss322697763	CHEV_8_72425225	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33488201					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70353976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	69 bp proximal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	within coordinates
Rr400887	regulatory region 400887	205 bp upstream
Rr400888	regulatory region 400888	1856 bp upstream
Rr664595	regulatory region 664595	368 bp proximal
Rr664596	regulatory region 664596	1222 bp proximal
Rr664597	regulatory region 664597	1362 bp proximal
Rr664598	regulatory region 664598	1481 bp proximal
Tssk6	testis-specific serine kinase 6	858 bp upstream
Tssr2594	transcription start site region 2594	442 bp upstream
Tssr77689	transcription start site region 77689	852 bp upstream
Tssr81543	transcription start site region 81543	191 bp upstream
Tssr81544	transcription start site region 81544	306 bp downstream
Tssr81545	transcription start site region 81545	335 bp downstream
Tssr81546	transcription start site region 81546	659 bp downstream
Tssr81547	transcription start site region 81547	689 bp downstream
Tssr81548	transcription start site region 81548	1832 bp downstream