rs33489596 SNP Detail

Summary

• ID
  rs33489596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153712552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATAACCAGA ATAGAGGAGT TTGTAACTTT CCAACACAAA GACCTGCTCC TTACTCTGAC
  CGCACCATCT CACATGTAAG TCTCTCAGTG TGGTAACGTG GTACCACATT GCACCCGATA
  AAACAATCAT AGGCCAACTT AAACACTAGG GATGAGACAA CTATATAAAA GGATGAACTA
  AAATGCTCAG GTTTTAAAGA AATTCCTTCT TTCCCCATGG ACTGTTATTT GGAAAAAAGG
  TATCATTTCA AATGGGAATC CCTGTTGCCT GCAACTGGAT GGCTCTTGAA AAGGAGGGTA
  Y
  AGATATCTGT TTCCTTCTTC CCAACACTAG CCTGAGGTAC AGTGGGACCG TGAGCAGGAG
  GGGCTGATGC AATACTGCAC TCTCAGATCA CTGTACAGGC TACAGCACAC AGTAGACACA
  CAGTAAATAC ATGCTAAAAT GATAACTGCT TTGTGCTCTA CCATTGCCCA GGAGACCTAG
  AGAAAGCTAC TTTGAGCCTC TGTCCTCAGC AGTTACTTCT GTAAGACAGT TGACAAGGCT
  GGCTTTTCCC CAAGGAACTC TGTATGGGCT GGGAAAGGCA GGAGCTGGCC TCACCTCCTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45285003	mCV22915576	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148006899	ENSMUSSNP641028	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33489596					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153712552 () rs orientation: forward

Symbol	Name	Function Class
Sun5	Sad1 and UNC84 domain containing 5	within coordinates
Tssr26917	transcription start site region 26917	429 bp downstream
Tssr26918	transcription start site region 26918	444 bp downstream