rs33489616 SNP Detail

Summary

• ID
  rs33489616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114268022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAGGAGG GTTTTTCCAG
  GGCAGCGGTC GGTCGAGGTT TAAATTACAC TTGCAGTGGC ACACGCCTTT AATCCCAGCA
  CTTGGGAGGC AGAGGCAGGC GGATTTCTGA ATCCAAGGCC AGCCGGGTCT ACAGAGAGTT
  CCAGGACAGC CAGGGCTATA CAGAGAAACT CTGTCTTGAA AAACCAAAAA AAAAAAAAAA
  W
  TAAAAAAAAT AAATAAATAA ATTACACCTG CAAAAGATCA CTCAGTAGAA AAGAGTAGCT
  GGGATTGTTA TATTAGAGGG AAGGATATAA CTGAAAGCTG CACAACTGAA TGTATGTCTG
  ACGTGAGTGT GGGAGGTAAA AAGTACAAGG GGGTGTATGG CTCAGTGGTC AAGCGGTTGC
  TCAGGATGCA CAAAGGCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45784775	mCV24685472	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149107098	ENSMUSSNP4149175	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33489616					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114268022 () rs orientation: forward

Symbol	Name	Function Class
Alkbh2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	1743 bp upstream
Cpgi16309	CpG island 16309	1563 bp distal
Cpgi16310	CpG island 16310	231 bp proximal
Gm73237	predicted gene, 73237	within coordinates
Rr378486	regulatory region 378486	1214 bp downstream
Rr617827	regulatory region 617827	1418 bp distal
Rr617828	regulatory region 617828	1686 bp distal
Rr617829	regulatory region 617829	46 bp proximal
Rr617830	regulatory region 617830	743 bp proximal
Rr617831	regulatory region 617831	1542 bp proximal
Tssr48056	transcription start site region 48056	403 bp upstream
Tssr48057	transcription start site region 48057	427 bp upstream
Tssr48058	transcription start site region 48058	1196 bp upstream
Tssr48059	transcription start site region 48059	1223 bp upstream
Tssr52694	transcription start site region 52694	1742 bp upstream
Tssr52695	transcription start site region 52695	744 bp downstream
Tssr52696	transcription start site region 52696	1625 bp downstream
Ung	uracil DNA glycosylase	425 bp upstream