rs33490787 SNP Detail

Summary

• ID
  rs33490787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44145366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATAAGG TCAAACATCT
  TGGATGTTTC AGTCAGGGTA TTTTTCAAAG AGATTAACAT TAAAATCAGT GAACTTGGAG
  TAAAGTAGGT TGACTGTTGT GTGTGAGCTT TATCTAACTG GAGGAGAAAC TTCAGTGGTG
  GGACTCATGG ACTAGCATGC CTGGCCCCTA GCTAGTTCTT TAATTGCATT TTCAAGCTAA
  Y
  TGTCATTTTA TTGACCCATT AAAATTTGTT GTCCCTTCCA CAATCAGGGA AACCTGTTAG
  ACCCCAAAAG AATCATCTTT GTAATCAAGA TGCTTAAGGA CTGAGGATTA GGGGAGAGTC
  TACAGGGAAC TACTGCAAAG TATGGCGACT ACATAATATA AAGAATCAGA GGTGTTACAT
  TCCTGAAAGG AGCTAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47304683	NES11074785	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33490787					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47304683	NES11074785	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44145366 () rs orientation: forward

Symbol	Name	Function Class
Gm29247	predicted gene 29247	within coordinates
Poglut2	protein O-glucosyltransferase 2	Noncoding-Transcript-Variant