rs33490793 SNP Detail

Summary

• ID
  rs33490793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44145627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCAAAAG AATCATCTTT
  GTAATCAAGA TGCTTAAGGA CTGAGGATTA GGGGAGAGTC TACAGGGAAC TACTGCAAAG
  TATGGCGACT ACATAATATA AAGAATCAGA GGTGTTACAT TCCTGAAAGG AGCTAGAGAA
  AGTAGAGTCG ATCCTGACTT CCAGAAAAAG GGAAAAACAA ATACCAGGGC CGGAGGGAAA
  Y
  GAGCATTGGG TGGGCGGTGA CAGGATTTGT AATAAGTGGT AATAGGTTTG ACTACCAACA
  GAGGCAGAGG CCAGATAAAG GCAGCTCTAG CATGTTTTAT TAGAATGAGG TTTGACTGAG
  ACTCAATGAG TAGTTATTCC AAAAGAAAAA GAGCTTAAAA CAGACAGAGT CATTTGCATT
  TTAAAACAGA GTCTTATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47304689	NES11074787	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33490793					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47304689	NES11074787	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44145627 () rs orientation: forward

Symbol	Name	Function Class
Gm29247	predicted gene 29247	within coordinates
Poglut2	protein O-glucosyltransferase 2	Noncoding-Transcript-Variant