rs33491119 SNP Detail

Summary

• ID
  rs33491119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133090658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAACTT ATGACAAGAG
  GATTGGCCCC AGAGGGCCCC AGAGGGCCCG AGAGGCATTT TCTCAGCTCA CCATCCATCC
  AGTGCCGGAT TAGGTGGCTC ACAGACCAGA AGGGTCGCAG ACTGTTTTAT TTTCCAAAAA
  GATCTCCATC AGACAATCCT ACCTCTGCTT ATTGTTTTGT TTACTGTGGA AATTCCATTC
  R
  AAAGTACAGA AAGTACAGGA TTATGATCGG AATCAAGACT AATTCCCAAC TAGGACTGTA
  CCGGGCAGTG TTCAAGCACT ACCCAGCTAC TAGCCCCAGC TAAGTGCTGT GGCTATAAAG
  TTAAGATGGA ATAACCCCGC CCCTTTGAGC TGTACACAGC CGGGTCAGGA AGACAGATGA
  GTAACTGGTC TTTGCATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49492418	NES12881680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33491119					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49492418	NES12881680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133090658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	734 bp proximal
Plekha6	pleckstrin homology domain containing, family A member 6	1290 bp upstream
Rr19297	regulatory region 19297	1458 bp distal
Rr28535	regulatory region 28535	342 bp proximal
Tssr211	transcription start site region 211	1014 bp upstream
Tssr8784	transcription start site region 8784	931 bp upstream
Tssr8785	transcription start site region 8785	1054 bp upstream