rs33491121 SNP Detail

Summary

• ID
  rs33491121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133090614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGGGAC CGTGACCGGT
  CCTTTCCTTC TCTGTGCCTC AGTTTCCTCA ACTTATGACA AGAGGATTGG CCCCAGAGGG
  CCCCAGAGGG CCCGAGAGGC ATTTTCTCAG CTCACCATCC ATCCAGTGCC GGATTAGGTG
  GCTCACAGAC CAGAAGGGTC GCAGACTGTT TTATTTTCCA AAAAGATCTC CATCAGACAA
  Y
  CCTACCTCTG CTTATTGTTT TGTTTACTGT GGAAATTCCA TTCGAAAGTA CAGAAAGTAC
  AGGATTATGA TCGGAATCAA GACTAATTCC CAACTAGGAC TGTACCGGGC AGTGTTCAAG
  CACTACCCAG CTACTAGCCC CAGCTAAGTG CTGTGGCTAT AAAGTTAAGA TGGAATAACC
  CCGCCCCTTT GAGCTGTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49492420	NES12881678	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33491121					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49492420	NES12881678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133090614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	778 bp proximal
Plekha6	pleckstrin homology domain containing, family A member 6	1334 bp upstream
Rr19297	regulatory region 19297	1414 bp distal
Rr28535	regulatory region 28535	386 bp proximal
Tssr211	transcription start site region 211	1058 bp upstream
Tssr8784	transcription start site region 8784	975 bp upstream
Tssr8785	transcription start site region 8785	1098 bp upstream