rs33492085 SNP Detail

Summary

• ID
  rs33492085
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133090521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCAGAG TTCCTGTGAG
  GGAGGCAGAT GATGTAATGG AAAGAGCTCA AGTCTGGGAC ACTAATGGGT GGGCTCTTCT
  TAGCCACCAC CTCGCAAAGG GACCGTGACC GGTCCTTTCC TTCTCTGTGC CTCAGTTTCC
  TCAACTTATG ACAAGAGGAT TGGCCCCAGA GGGCCCCAGA GGGCCCGAGA GGCATTTTCT
  S
  AGCTCACCAT CCATCCAGTG CCGGATTAGG TGGCTCACAG ACCAGAAGGG TCGCAGACTG
  TTTTATTTTC CAAAAAGATC TCCATCAGAC AATCCTACCT CTGCTTATTG TTTTGTTTAC
  TGTGGAAATT CCATTCGAAA GTACAGAAAG TACAGGATTA TGATCGGAAT CAAGACTAAT
  TCCCAACTAG GACTGTACCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49492424	NES12881673	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33492085					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49492424	NES12881673	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133090521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	871 bp proximal
Plekha6	pleckstrin homology domain containing, family A member 6	1427 bp upstream
Rr19297	regulatory region 19297	1321 bp distal
Rr28535	regulatory region 28535	479 bp proximal
Tssr211	transcription start site region 211	1151 bp upstream
Tssr8784	transcription start site region 8784	1068 bp upstream
Tssr8785	transcription start site region 8785	1191 bp upstream