rs33492437 SNP Detail

Summary

• ID
  rs33492437
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44146078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCTTAAC CTCTGAAGTG
  CTAGGATTAT AGGCATGAAC CACCACAATT GGCTGAGTTT TGTTTTGCTT TTGGAGGCCT
  GTTTGAATCA GAGCACTCAC CAGAATCAAG GACCCAAACT CGCCTATTTC TTCTGCTCAT
  AGGTAATAAC TGTAACAAAA CAGACCCTTA AAATAAAGGC AGTTTTATTA TAAAAATTTT
  W
  AAATGTGATG TAAAAGACAG TCATGGGAAC ACTGCATAAG ACGAAATACT GTGAGAAAGT
  GAATGGGCAC ACGTAAATTT GACATTGTCT GTGAAACATA CTTAAAAATA ACCTTTATAG
  TAAAGTGTCC TCAGAGCACC ATGATTTGAA CAGAAGATAT TTTGCTTCTC AGAGTTCATC
  TTTGGCCTGT AATTAAGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47304704	NES11074723	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33492437					SNP	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47304704	NES11074723	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44146078 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29247	predicted gene 29247			within coordinates
Poglut2	protein O-glucosyltransferase 2			mRNA-UTR
				Noncoding-Transcript-Variant