rs33492933 SNP Detail

Summary

• ID
  rs33492933
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129916574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCAATGG TGGAGGTTAG
  GTTTTTGCTT CCGATGGCCG GCTGGCCTAC TCCACAACCT GACTGACCTT GATTTTCACT
  GTCTCCTGCC TTAGCCTCTC AAGTAAACTG GATTAGGGGC TTACTGGGGT CTGCTCTTGG
  GCTGTTTACT TAACCCTTCT CTGTTTTGTT TTGGGACAAT GCCTCCGGTA ACGGATGTTG
  S
  CTTGGATCTC GCTGTTCTCA CGTCTCAGCC TCCTAGTACT GGTCACGCAG GAAAAACTCT
  GTTTTTCTGT TATAAAGAAT TTACTAATAA ACGTGTTTGG AAATATTAAA TTACATAAGC
  AGAATTTCGC TAAAGGAGCT CTGCTCCCAA CATGTCTGGA AGATAGTGAA CTAGCCGAGC
  TTATTAGAAA CTATGAAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45785274	mCV25038613	ABI	CRAMUS_MOUSE	f	SNP			G					C
ss60840614	NES16012840	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	G	C	C		G	C	C	C		G	C	C	G		C
ss144477409	ENSMUSSNP5553926	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
ss321692416	CHEV_5_130363603	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33492933					SNP	C	C	G	C	G	C	C	C	G	C	C	C	G	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840614	NES16012840	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129916574 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	263 bp upstream
Cpgi16684	CpG island 16684	112 bp distal
Rr399383	regulatory region 399383	224 bp downstream
Rr621372	regulatory region 621372	274 bp distal
Rr621373	regulatory region 621373	within coordinates
Tssr53498	transcription start site region 53498	576 bp upstream
Tssr53499	transcription start site region 53499	428 bp upstream
Tssr53500	transcription start site region 53500	304 bp upstream
Tssr53501	transcription start site region 53501	253 bp upstream