rs33493369 SNP Detail

Summary

• ID
  rs33493369
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44146439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTCTC AGAGTTCATC
  TTTGGCCTGT AATTAAGAAG AAAAATGTTA AGAGCCACTA AAAAAAATCT TAGGAATCAA
  GAATGCTCAT ACCAGATAAT TATTTTTTCC TAAAGATGAG AGGAGGGTGG AAAAAAAAAA
  TCCAAGTTTC TTCTAGGTGT TCTAAATGCT CAGGACTATT TCTGGAAGAC CAGAACCCTG
  R
  GTTATGGGTG GTGTGAGCAA GGGATGGGGT AAACAGAGAA CAAGGTTTGC TACTCTCACT
  CAAACTTCCC ATACTTAGTG GAAGACACTG ACTGGGTACC TACTCTGTCT AAATCATTAA
  GAGATATAAG GGAAACGGAA CTGCCCCATT TTATGAAGAG CCAAAACAAG TATGATATTT
  ATTCCATTTC ATTATTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47304716	NES11074727	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33493369					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47304716	NES11074727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44146439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm29247	predicted gene 29247			within coordinates
Poglut2	protein O-glucosyltransferase 2			Intron
				Noncoding-Transcript-Variant