rs33494349 SNP Detail

Summary

• ID
  rs33494349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84495149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT GGGTCCTGTA ATGGTCGAAA
  Y
  TGCAAGCGTG GAGGTTGGGA GGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39542857	mCV23110576	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33494349					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84495149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	469 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm56881	predicted gene, 56881	426 bp upstream
Rr333589	regulatory region 333589	1652 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	152 bp upstream
Tssr146044	transcription start site region 146044	1960 bp downstream
Tssr146045	transcription start site region 146045	604 bp downstream
Tssr146046	transcription start site region 146046	883 bp upstream
Tssr149652	transcription start site region 149652	1700 bp upstream
Tssr149653	transcription start site region 149653	1648 bp upstream
Tssr149654	transcription start site region 149654	1524 bp upstream
Tssr149655	transcription start site region 149655	1380 bp upstream
Tssr149656	transcription start site region 149656	1339 bp upstream
Tssr149657	transcription start site region 149657	1109 bp upstream
Tssr149658	transcription start site region 149658	1066 bp upstream
Tssr149659	transcription start site region 149659	1030 bp upstream
Tssr149660	transcription start site region 149660	1004 bp upstream
Tssr149661	transcription start site region 149661	941 bp upstream
Tssr149662	transcription start site region 149662	901 bp upstream
Tssr149663	transcription start site region 149663	832 bp upstream
Tssr149664	transcription start site region 149664	789 bp upstream
Tssr149665	transcription start site region 149665	717 bp upstream
Tssr149666	transcription start site region 149666	655 bp upstream
Tssr149667	transcription start site region 149667	555 bp upstream
Tssr149668	transcription start site region 149668	531 bp upstream
Tssr149669	transcription start site region 149669	469 bp upstream
Tssr149670	transcription start site region 149670	16 bp downstream
Tssr149671	transcription start site region 149671	106 bp downstream
Tssr149672	transcription start site region 149672	218 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates