rs33494443 SNP Detail

Summary

• ID
  rs33494443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85430964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGG CAGAGGCGCC TCACCTGCTG
  Y
  TCAGTGAACT CCCTGTAAAA GGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46282637	mCV24193638	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145392352	ENSMUSSNP4340198	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss322751406	CHEV_8_87228234	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33494443					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85430964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20708	CpG island 20708	within coordinates
Cpgi20709	CpG island 20709	728 bp proximal
Lyl1	lymphoblastomic leukemia 1	within coordinates
Nfix	nuclear factor I/X	377 bp downstream
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	182 bp upstream
Tssr78439	transcription start site region 78439	920 bp downstream
Tssr82117	transcription start site region 82117	791 bp downstream
Tssr82118	transcription start site region 82118	827 bp downstream
Tssr82119	transcription start site region 82119	855 bp downstream
Tssr82120	transcription start site region 82120	932 bp downstream
Tssr82121	transcription start site region 82121	1479 bp downstream
Tssr82122	transcription start site region 82122	1714 bp downstream
Tssr82123	transcription start site region 82123	1863 bp downstream
Tssr82124	transcription start site region 82124	1892 bp downstream
Tssr82125	transcription start site region 82125	1976 bp downstream