rs33498115 SNP Detail

Summary

• ID
  rs33498115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34574697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAACTAT GACTGCTTAC TGGCCCACTT GCTAAGTAGC
  TTTCTTAAAT GGCCCAGGCC TACCCGACTG GAGATGGCTC TGCCCACAGT GGGATGGGCC
  Y
  TCCCATCTCA ATCACAGATC AAGACACTCA CCCCGACATG GACGATCCTT CAATTGAGGT
  TCCCTCTTCC CAGATGACTC TAAGTTGTTT CAAGCTGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46282839	mCV24922140	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss149092923	ENSMUSSNP240463	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322575046	CHEV_8_35170597	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33498115					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34574697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	572 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	803 bp upstream
Tssr80889	transcription start site region 80889	219 bp downstream
Tssr80890	transcription start site region 80890	273 bp downstream
Tssr80891	transcription start site region 80891	900 bp downstream
Tssr80892	transcription start site region 80892	968 bp downstream
Tssr80893	transcription start site region 80893	1249 bp downstream