rs33500286 SNP Detail

Summary

• ID
  rs33500286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173108886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAAC TCAGCCCTTC
  TTTGGCTGGA AGGCTAAGAC ACACCCACCA ACCCCATAGG AGGCGGTTTA GCTCAAAGCC
  TCATAGAAAC GGGGTCTCCA ACAAGTCACC CCACGGGATG AGGTTGGGAA CTCACGAGAA
  AGCCTTTGCG GTCTGTTTAT TGCAGCCCCT GAGTCGGGGG CAGCCCACCC TGGAAGGGGA
  R
  CCTGATTCAA GAGAATTGTC TCTTCTACCT GTCTCCCGCT CCCAGGCAGA GTCCCACTTA
  GCATCGACGC CTACACCCCC ATGCCGTTCA CCGAATGCTT GCTTCTCACT GAAGAGCTTC
  ACGGATAACT TCTCTAATAA TCACTTCAGC ACAGGAACTA GGAGGCTCTC AGAACAGCAA
  GAGCTACAGC AAGGTGGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45286304	mCV23267303	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148331745	ENSMUSSNP2512950	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320622163	CHEV_2_173092594	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33500286					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173108886 () rs orientation: forward

Symbol	Name	Function Class
Pmepa1	prostate transmembrane protein, androgen induced 1	Intron
Rr571915	regulatory region 571915	1483 bp distal
Rr571917	regulatory region 571917	within coordinates
Tssr27982	transcription start site region 27982	1154 bp upstream