rs33500349 SNP Detail

Summary

• ID
  rs33500349
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43920959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTC CACAACGCTA TGAATGGATG
  S
  CCTGAATAAT AATCATGTGC TTGTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39543469	mCV25199154	ABI	CRAMUS_MOUSE	f	SNP		G	G					C		G
ss62746847	NES17342904	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	G	C		C	G	G	G		C	G	G	C		C
ss145670876	ENSMUSSNP5322884	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss325395823	CHEV_17_43747017	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33500349					SNP	G	G	G	C	G	G	C	C	C	G	G	G	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62746847	NES17342904	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43920959 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527133	regulatory region 527133	1498 bp proximal
Rr527134	regulatory region 527134	1711 bp proximal
Tssr144713	transcription start site region 144713	1196 bp upstream
Tssr144714	transcription start site region 144714	1273 bp upstream
Tssr144715	transcription start site region 144715	1809 bp upstream
Tssr148139	transcription start site region 148139	1959 bp downstream