rs33500684 SNP Detail

Summary

• ID
  rs33500684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3427136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAAATAAAC AGGATCATAT ACTGGATAGA TTAAGACATC TTCAATATTT TTCAAAGGTT
  TATTTATTTT TTTATTTTAC ATGTATGCTT GTTTACCTGT GTGTAGCTGT CCTATGAGTG
  CTAGGAATTA AACCTTGGCC TTCTGGAAGA GCAGCCATCT TAACTACTTG AGCTATTTCT
  CCAGCCCTGT CTAGCTCTTA CTATTGTATT TCTGTGATCC GTCTGTGTTG CTAGCTGATG
  TACCTTTGTT TTTTTTGTTT GTTTGTTTGG TTTGGTTTGG TTTGGTTTGG TTTGGTTTTT
  Y
  GAGACAGGGT TTCTCTGTAT AGCCCTGGCT GTCCTGGAGC TCACTTTGTA GACCAGGCTG
  GCCTCGAACT CAGAAATCCA CCTGCCTCTG CCTCCCGAGT GCTGAGATTA AAGGCGTGCA
  CCACCACACC CAGCTGTACC TTTGTTTTTG TAAGAGTATG TTTATGTGTG TAAATGGTGG
  TTCTGCTAGC AAGAATGCTA GGCCGGAGAG GTGGCTCAGT GGTGAGCGAT GGCTGCTGCG
  ATGGGCCAGA CATGATAGAG GTTGAGAATG TAGTAGTTCA CTGTCGGACA GAGTTTTGAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45286037	mCV23104876	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146261824	ENSMUSSNP4631383	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33500684					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3427136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1685 bp distal
Dclre1c	DNA cross-link repair 1C	within coordinates
Rr367090	regulatory region 367090	1944 bp downstream
Rr550902	regulatory region 550902	1924 bp distal
Rr550903	regulatory region 550903	1631 bp distal
Tssr15890	transcription start site region 15890	1892 bp downstream