rs33501600 SNP Detail

Summary

• ID
  rs33501600
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44237486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTATTGA AGCACATAGA
  GCTACCCACG ACTGTATCAG CTGTTTCTTG CGAAGGGTTT CAGAGAAGTG AGTTTGACTG
  AGCAATTCAT CTTTTAGAAT CCAAGTGCCT AATATCAGAC AGACATCAGC CTAACAGACC
  CTGGGGATGA TTCCCACTGG AACAAGTACA GTCTGTCCTG CAAGGTGCCT CTGTTCTTGT
  S
  GTCCGCTGCC GGAATAGCAG GAAAAGCTTT CTGAAGGCGG TTTCCAAGAG TTGCTGTCCT
  TAGCTCACCC CACAGCTCTG TTCTGTTCTG CTGATACAGT GAACATCCAC TCCTAGTAGT
  CAGGGAACAA ACAGCGTCAC TCATTGAGCC TAGTCACTAA CAGATCAGGT GATGTTTTAA
  AGTTCAGCCC CGCCCACCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47306441	NES11069900	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33501600					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47306441	NES11069900	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44237486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi227	CpG island 227	320 bp proximal
Rr410478	regulatory region 410478	within coordinates