rs33501690 SNP Detail

Summary

• ID
  rs33501690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154704823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGATCAG GCTGGCCTTG
  AACTCACAGA GATCTGCCTG CCTCTGCCTC CTGATTGCTG GGATTAAAGA CCAGCAAATT
  CCCTCCACCC CTATGCCCCC AGTAAAGCAT ACTTTCTTAA CATTGAAAAA ATAAAGGCTC
  AGGGCTGATG AGATGGCTCA GCAGAAAAGA ACACTGGCTG CTCTTCCAGA GGTTCTGAGT
  Y
  CAATTTCCAG CAACCACATG ATGGATTATG ACCAACTATA AAGGGATCGG ATGCTCTATA
  TTTGAGTGCA AGTACACATA CAGAGCATAC TGACATTTAA AAAATACAGA AATAAACTAA
  AAATAAAATA AAGGAACAAA TCCACAGTTG AAGTTACTGC TCTTACACAA CTGAGTCCTT
  TGGAAAAAGT CAAGTGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45286420	mCV22744493	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148041009	ENSMUSSNP4283063	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33501690					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154704823 () rs orientation: forward

Symbol	Name	Function Class
Raly	hnRNP-associated with lethal yellow	within coordinates
Tssr21048	transcription start site region 21048	1040 bp downstream