rs33502354 SNP Detail

Summary

• ID
  rs33502354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52521132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA GACGGAGTAG GAAGAGAAGG
  R
  AAAAGAAGGA GGGGGAGGAA GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45786726	mCV25026707	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148440016	ENSMUSSNP5590315	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33502354					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52521132 () rs orientation: forward

Symbol	Name	Function Class
Rr611420	regulatory region 611420	within coordinates
Rr611421	regulatory region 611421	12 bp proximal
Sod3	superoxide dismutase 3, extracellular	14 bp upstream
Tssr46168	transcription start site region 46168	122 bp upstream
Tssr46169	transcription start site region 46169	135 bp upstream
Tssr46170	transcription start site region 46170	166 bp upstream